You cloned with `git`, and your Git configuration is set to use Windows line endings. See this page on [configuring Git to handle line endings](https://docs.github.com/en/get-started/getting-started-with-git/configuring-git-to-handle-line-endings).
You don't have a `/usr/bin/ruby` or it is not executable. It's not recommended to let this persist; you'd be surprised how many `.app`s, tools and scripts expect your macOS-provided files and directories to be *unmodified* since macOS was installed.
After running `brew update`, you receive a Git error warning about untracked files or local changes that would be overwritten by a checkout or merge, followed by a list of files inside your Homebrew installation.
This is caused by an old bug in in the `update` code that has long since been fixed. However, the nature of the bug requires that you do the following:
1. You are using a terminal multiplexer such as `tmux` or `screen`. You should interact with `launchctl` from a separate Terminal.app shell.
1. You are attempting to run `launchctl` while logged in remotely. You should enable screen sharing on the remote machine and issue the command using Terminal.app running on that machine.
This is an issue in the connection between your machine and GitHub, rather than a bug in Homebrew itself. See this [discussion topic](https://github.com/orgs/Homebrew/discussions/666) for a number of solutions others have found, such as using a wired connection or a VPN, or disabling network monitoring tools.
1. Run `/opt/homebrew/bin/brew bundle install --global` to replicate your original formulae installation using your new Homebrew installation in `/opt/homebrew`.
Expect to spend some time [searching Homebrew's formulae and cask list](https://formulae.brew.sh/)
First, let's tackle a common problem: do you have a `.curlrc` file? Check with `ls -A ~ | grep .curlrc` (if you get a result, the file exists). Those are a frequent cause of issues of this nature. Before anything else, remove that file and try again. If it now works, do not open an issue. Incompatible `.curlrc` configurations must be fixed on your side.
If, however, you do not have a `.curlrc` or removing it did not work, let’s see if the issue is upstream:
1. Go to the vendor’s website (`brew home <cask_name>`).
2. Find the download link for the app and click on it.
1. Look around the app’s website and find out what the latest version is. It may be expressed in the URL used to download it.
2. Take a look at the cask’s version (`brew info <cask_name>`) and verify it is indeed outdated. If the app’s version is `:latest`, it means the `url` itself is outdated. It will need to be changed to the new one.
Help us by [submitting a fix](https://github.com/Homebrew/homebrew-cask/blob/HEAD/CONTRIBUTING.md#updating-a-cask). If you get stumped, [open an issue](https://github.com/Homebrew/homebrew-cask/issues/new?template=01_bug_report.md) explaining your steps so far and where you’re having trouble.
Start by diagnosing your connection (try to download other casks, or browse around the web). If the problem is with your connection, try a website like [Ask Different](https://apple.stackexchange.com/) to ask for advice.
If the problem persists, the cask must be outdated. It’ll likely need a new version, but it’s possible the version has remained the same (this happens occasionally when the vendor updates the app in-place).
Help us by [submitting a fix](https://github.com/Homebrew/homebrew-cask/blob/HEAD/CONTRIBUTING.md#updating-a-cask). If you get stumped, [open an issue](https://github.com/Homebrew/homebrew-cask/issues/new?template=01_bug_report.md) explaining your steps so far and where you’re having trouble.
In this case, it’s likely your user account has no admin rights and therefore lacks permissions for writing to `/Applications`, which is the default install location. You can use [`--appdir`](https://github.com/Homebrew/homebrew-cask/blob/HEAD/USAGE.md#options) to choose where to install your applications.
If `--appdir` doesn’t fix the issue or you do have write permissions to `/Applications`, verify you’re the owner of the `Caskroom` directory by running `ls -dl "$(brew --caskroom)"` and checking the third field. If you are not the owner, fix it with `sudo chown -R "$(whoami)" "$(brew --caskroom)"`. If you are, the problem may lie in the app bundle itself.
Some app bundles don’t have certain permissions that are necessary for us to move them to the appropriate location. You may check such permissions with `ls -ls '/path/to/application.app'`. If you see something like `dr-xr-xr-x` at the start of the output, that may be the cause. To fix it, we need to change the app bundle’s permission to allow us to move it, and then set it back to what it was (in case the developer set those permissions deliberately). See [litecoin.rb](https://github.com/Homebrew/homebrew-cask/blob/aa461148bbb5119af26b82cccf5003e2b4e50d95/Casks/l/litecoin.rb#L17-L27) for an example of such a cask.
Help us by [submitting a fix](https://github.com/Homebrew/homebrew-cask/blob/HEAD/CONTRIBUTING.md#updating-a-cask). If you get stumped, [open an issue](https://github.com/Homebrew/homebrew-cask/issues/new?template=01_bug_report.md) explaining your steps so far and where you’re having trouble.
First, you need to identify which artifact is not being handled correctly anymore. It’s explicit in the error message: if it says `It seems the App source…'` then the problem is with the [`app`](https://docs.brew.sh/Cask-Cookbook#stanza-app) stanza. This pattern is the same across [all artifacts](https://docs.brew.sh/Cask-Cookbook#at-least-one-artifact-stanza-is-also-required).
Fixing this error is typically easy, and requires only a bit of time on your part. Start by downloading the package for the cask: `brew fetch <cask_name>`. The last line of output will inform you of the location of the download. Navigate there and manually unpack it. As an example, let's say the structure inside the archive is as follows:
The cask expects `SomeApp.app` to be in the top directory of the archive (see how it says simply `SomeApp.app`) but the developer has since moved it to be inside a `Files` directory. All we have to do is update that line of the cask to follow the new structure: `app "Files/SomeApp.app"`.
Note that occasionally the app’s name changes completely (from `SomeApp.app` to `OtherApp.app`, let's say). In these instances, the filename of the cask itself, as well as its token, must also change. Consult the [`token reference`](https://docs.brew.sh/Cask-Cookbook#token-reference) for complete instructions on the new name.
Help us by [submitting a fix](https://github.com/Homebrew/homebrew-cask/blob/HEAD/CONTRIBUTING.md#updating-a-cask). If you get stumped, [open an issue](https://github.com/Homebrew/homebrew-cask/issues/new?template=01_bug_report.md) explaining your steps so far and where you’re having trouble.
Make sure the issue really lies with your macOS version. To do so, try to install the software manually. If it is incompatible with your macOS version, it will tell you. In that case, there is nothing we can do to help you install the software, but we can add a [`depends_on macos:`](https://docs.brew.sh/Cask-Cookbook#depends_on-macos) stanza to prevent the cask from being installed on incompatible macOS versions.
Help us by [submitting a fix](https://github.com/Homebrew/homebrew-cask/blob/HEAD/CONTRIBUTING.md#updating-a-cask). If you get stumped, [open an issue](https://github.com/Homebrew/homebrew-cask/issues/new?template=01_bug_report.md) explaining your steps so far and where you’re having trouble.
If your Homebrew installation gets messed up (and fixing the issues found by `brew doctor` doesn't solve the problem), reinstalling Homebrew may help to reset to a normal state. To easily reinstall Homebrew, use [Homebrew Bundle](https://github.com/Homebrew/homebrew-bundle) to automatically restore your installed formulae and casks. To do so, run `brew bundle dump`, [uninstall](https://docs.brew.sh/FAQ#how-do-i-uninstall-homebrew), [reinstall](https://docs.brew.sh/Installation) and run `brew bundle install`.